VMD-L Mailing List

From: hamid mosaddeghi (hamid592004m_at_yahoo.com)
Date: Wed Feb 20 2013 - 18:03:13 CST

Dear all I run system with other software and need to edit residue name in final config and trajectory for viewing in VMD correctly my intial file as pdb format is:  -------------------------------------------------------- ATOM      1 N        MET A   1    65.790   57.783   56.121  1.00  0.00            N ATOM      2 H        MET A   1    66.269   57.783   56.976  1.00  0.00            H .. ATOM     18 N      PRO A   2    68.775   58.307   55.730  1.00  0.00            N .. .. ATOM     34 CA     ILE A   3    71.916   60.622   53.014  1.00  0.00            C .. ATOM     26 H22  PRO A   2    70.325   56.443   57.858  1.00  0.00            H .. . to 2500 atoms  --------------------------------------- and final file as pdb is: ------------------------------------------ ATOM      1  NH1 DL_ D   1      21.058 -20.202  13.409  0.00  0.00 ATOM      2  H      DL_ D   1      20.132 -19.926  13.154  0.00  0.00 .. ATOM      18  N    DL_ D   1      22.137 -19.790  12.636  0.00  0.00 .. .. ATOM      34  CA  DL_ D   1      22.800 -19.323  13.327  0.00  0.00 .. ATOM      26  H22  DL_ D   1      23.399 -21.551  12.838  0.00  0.00 .. .. . to 2500 atoms ---------------------------------- I need change atome name,DL_D residue name and number in final file to intial file. do some bod help to me? I used pdbeditor but this work is not possible. have vmd tools for this pupose? any suggestion will be appreciated. Thanks