From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Mon Sep 19 2011 - 07:03:25 CDT

On Sun, 2011-09-18 at 10:22 -0700, puroorava annapaneni wrote:
> Hello
>
>
> In my simulation some of the atoms are flying away and that results in
> a
>
> change in total number of atoms.
>
> So I used topotools 'readvarxyz <filename>' command to get all the
> frames.
>
>
> But unable to do so, and I get the following
>
>
>
> vmd > topo readvarxyz dump.xyz
> Info) readvarxyz: read in 401 frames requiring 1174 atoms storage.
> Type map: 2 1 4 3 5
> Max type counts: 32 944 16 32 150
> can't read "a": no such variable

> I use VMD 1.9 and topotools 1.2

VMD 1.9 ships with version 1.1. i doubt it is
topotools 1.2, since that one has this bug fixed:
http://sites.google.com/site/akohlmey/software/topotools

axel.
>
> Regards
> Chakri
>
>
>