VMD-L Mailing List

From: Vermaas, Josh (vermaasj_at_msu.edu)
Date: Mon Feb 05 2024 - 19:27:14 CST

Yeah. CUDA without ray tracing should be fine.

-Josh

On 2/5/24, 4:31 PM, "Gianluca Interlandi" <gianluca_at_u.washington.edu <mailto:gianluca_at_u.washington.edu>> wrote:

I just downloaded the version without "RTX RTRT". That should be enough,
right? Since I don't have a video card capable of "RTX RTRT" (with at
least 6 GB).

Gianluca

On Mon, 5 Feb 2024, Josh wrote:

> Hi Gianluca,
>
> You will be much happier if you install VMD 1.9.4a57. I know it says alpha,
> and alpha's can be scary, but that is probably the easiest path forward.
> Since the *normal* way you'd get the differences is to make a diff between
> the sources, which is probably more work than you want.
>
> -Josh
>
> On 2/5/24 1:58 PM, Gianluca Interlandi wrote:
>> Dear all,
>>
>> I have been using an older version of VMD and I am now looking at version
>> 1.9.3. I see that the ParseFEP plugin in VMD 1.9.3 can be run from the
>> command line. When I launch it, it says: "ParseFEP: Version 1.9.2". I see
>> though that the latest version of ParseFEP is 2.0. Is there a place where I
>> can read about the differences between versions 1.9.2 and 2.0 and also
>> download version 2.0?
>>
>> My other question is about the plugins solvate and autoionize. In the past
>> (like in 1.8.7) they were not able to produce a PSF with extended atom
>> types such as for glycans or CGenFF. I know that this was solved at some
>> point. Is this already the case for 1.9.3? (Just confirming)
>>
>> I would appreciate any help on this.
>>
>> Thanks!
>>
>> Gianluca
>>
>> -----------------------------------------------------
>> Gianluca Interlandi, PhD gianluca_at_u.washington.edu <mailto:gianluca_at_u.washington.edu>
>> +1 (206) 685 4435
>> https://urldefense.com/v3/__http://gianluca.today/__;!!DZ3fjg!_kpSy3gBQ_AMVrDhJTIx1IgDvuJfXKjzTDcNAlAmMYxIZ5ZHF9Z2-5hIU_1_NlzxZYQpdyKpYy7UX1_0pl01ZpThPTA$ <https://urldefense.com/v3/__http://gianluca.today/__;!!DZ3fjg!_kpSy3gBQ_AMVrDhJTIx1IgDvuJfXKjzTDcNAlAmMYxIZ5ZHF9Z2-5hIU_1_NlzxZYQpdyKpYy7UX1_0pl01ZpThPTA$>
>> Department of Bioengineering
>> University of Washington, Seattle WA U.S.A.
>> -----------------------------------------------------
>>
>
> --
> Josh Vermaas
>
> vermaasj_at_msu.edu <mailto:vermaasj_at_msu.edu>
> Assistant Professor, Plant Research Laboratory and Biochemistry and Molecular
> Biology
> Michigan State University
> vermaaslab.github.io
>
>

-----------------------------------------------------
Gianluca Interlandi, PhD gianluca_at_u.washington.edu <mailto:gianluca_at_u.washington.edu>
+1 (206) 685 4435
https://urldefense.com/v3/__http://gianluca.today/__;!!HXCxUKc!0MzZtncFJArXuapzA7z8IFkLvznGrZIa-_1_5nCS1TCdis2jT9tajPx8UXOF8glgD4xHSxdwO_0XxmK9_TWXERMg$ <https://urldefense.com/v3/__http://gianluca.today/__;!!HXCxUKc!0MzZtncFJArXuapzA7z8IFkLvznGrZIa-_1_5nCS1TCdis2jT9tajPx8UXOF8glgD4xHSxdwO_0XxmK9_TWXERMg$>

Department of Bioengineering
University of Washington, Seattle WA U.S.A.
-----------------------------------------------------