VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Nov 08 2002 - 17:00:06 CST
- Next message: John Stone: "Re: Labels 'springs' in labels form"
- Previous message: Marcela Madrid: "alignment and rmsd fit"
- In reply to: Marcela Madrid: "alignment and rmsd fit"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi Marcela,
You can use atom selections to limit what the fit is
applied to. The scripting interface will give you a lot of
freedom to customize in this regard:
http://www.ks.uiuc.edu/Research/vmd/vmd-1.7.1/ug/node185.html
Thanks,
John Stone
vmd_at_ks.uiuc.edu
On Fri, Nov 08, 2002 at 05:16:38PM -0500, Marcela Madrid wrote:
> hi,
>
> I was wondering if the default alignmet and RMS fit
> includes the H atoms, and if so, if there is an easy
> way to specify only heavy atoms. ( I am using VMD 1.8 and
> I love it).
> Thanks, Marcela
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
- Next message: John Stone: "Re: Labels 'springs' in labels form"
- Previous message: Marcela Madrid: "alignment and rmsd fit"
- In reply to: Marcela Madrid: "alignment and rmsd fit"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]