VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Apr 10 2006 - 23:55:53 CDT

Hi,
  Which version of VMD are you running on your SGI machine?
The older versions didn't include the psfgen plugin, so they would
not be usable for the current versions of the tutorials. The startup
messages printed in the VMD console should indicate which version it is.
You can also verify whether or not your VMD has psfgen with the command:
  package require psfgen
(which should return the version number of the psfgen plugin, if it exists)

  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Apr 11, 2006 at 01:23:30PM +1000, Praveen Madala wrote:
> Hi,
>
> I am trying to do NAMD tutorial, I ma getting problem in
> preparing psf files. I created a ubq.pgn fileand then I
> type
>
> " vmd -dispdev text -e ubq.pgn " on IRIX window.
>
> It is opening twp consoles Xplor-O and Vmd_IRIX6.
>
> In Vmd_IRIX6 console, it is showing the
>
> pdbalias command not found
> segment command not found
> coordpdb command not found
> guesscoord command not found
> writepdb command not found
> writepsf command not found
>
> But I can start vmd GUI by typing vmd (alias). I dont know
> why it is not recognising these commands.
>
> Can someone please help me.....
>
> regards,
> Praveen K Madala
> PhD student
> Fairlie Group 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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