VMD-L Mailing List
From: Stefan Doerr (stefdoerr_at_gmail.com)
Date: Wed Mar 25 2015 - 10:57:36 CDT
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- In reply to: Dolan, Michael A. (NIH/NIAID) [C]: "Visualizing H-bonds between two segnames or chains"
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I usually do it with a within command to find the interface between the
chains. It's not perfect but works if you play around with the radii.
(within 4 of chain A) and (within 4 of chain B)
On Wed, Mar 25, 2015 at 4:30 PM, Dolan, Michael A. (NIH/NIAID) [C] <
dolanmi_at_niaid.nih.gov> wrote:
> Hello,
>
>
>
> I’ve seen some posts addressing this question before, but has there been
> any changes in the code to address the possibility of being able to show
> only those H-bonds occurring between two chains or segments?
>
>
>
> Something like the following selection will show H-bonds between chain A
> and B, but also within chain A and B:
>
>
>
> chain A B
>
>
>
> I guess that there is no Boolean-like way to do this. Perhaps the addition
> of a ‘between’ option….
>
>
>
> Thanks!
>
> Mike
>
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- In reply to: Dolan, Michael A. (NIH/NIAID) [C]: "Visualizing H-bonds between two segnames or chains"
- Next in thread: Josh Vermaas: "Re: Visualizing H-bonds between two segnames or chains"
- Maybe reply: Josh Vermaas: "Re: Visualizing H-bonds between two segnames or chains"
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