VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Jan 06 2010 - 12:56:47 CST

Hi,
  Hmm, I don't see anything on either of those drives that would
obviously conflict with VMD. Can you send me a copy of the
environment variables from the affected machine? I'm puzzled
as to what might be creating problems here, and I'll need to gather
more of the information about your library search paths in order
to track it down.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Sun, Jan 03, 2010 at 09:19:29PM -0700, Guo Zhi wrote:
> The searching results are like below
>
> C:\>dir /s *tcl*.dll
> The volume in drive C has no label.
>
> C:\Program Files\CyberLink\PowerDVD8
>
> 2004-09-15 11:33 1,693,696 LTCLR13n.dll
> 1 files 1,693,696 bytes
>
> C:\Program Files\OriginLab\Origin8
>
> 2007-10-15 13:23 1,699,840 LTCLR14N.dll
> 1 files 1,699,840 bytes
>
> C:\WINDOWS\$hf_mig$\KB952004\SP2QFE
>
> 2008-06-12 06:47 58,880 msdtclog.dll
> 1 files 58,880 bytes
>
> C:\WINDOWS\$hf_mig$\KB952004\SP3GDR
>
> 2008-06-12 07:20 58,880 msdtclog.dll
> 1 files 58,880 bytes
>
> C:\WINDOWS\$hf_mig$\KB952004\SP3QFE
>
> 2008-06-12 07:09 58,880 msdtclog.dll
> 1 files 58,880 bytes
>
> C:\WINDOWS\$NtServicePackUninstall$
>
> 2004-08-16 09:38 187,904 certcli.dll
> 2008-06-12 07:17 58,880 msdtclog.dll
> 2001-09-05 13:00 54,272 stclient.dll
> 3 files 301,056 bytes
>
> C:\WINDOWS\$NtUninstallKB952004$
>
> 2008-04-13 19:13 58,880 msdtclog.dll
> 1 files 58,880 bytes
>
> C:\WINDOWS\$NtUninstallKB952004_0$
>
> 2004-08-16 09:38 58,880 msdtclog.dll
> 1 files 58,880 bytes
>
> C:\WINDOWS\ServicePackFiles\i386
>
> 2008-04-13 19:13 187,904 certcli.dll
> 2008-04-13 19:13 58,880 msdtclog.dll
> 2008-04-13 19:13 59,392 stclient.dll
> 3 files 306,176 bytes
>
> C:\WINDOWS\system32
>
> 2008-04-13 19:13 187,904 certcli.dll
> 2001-09-05 13:00 33,280 eventcls.dll
> 2007-10-15 13:23 1,703,936 LTCLR14n.dll
> 2008-06-12 07:20 58,880 msdtclog.dll
> 2008-04-13 19:13 59,392 stclient.dll
> 5 files 2,043,392 bytes
>
> C:\WINDOWS\system32\dllcache
>
> 2001-09-05 13:00 33,280 eventcls.dll
> 2008-06-12 07:20 58,880 msdtclog.dll
> 2 files 92,160 bytes
>
> Total number of files:
> 20 files 6,430,720 bytes
> 0 ,o:directories 87,558,369,280 bytes free
>
> C:\>
>
> Results from drive E
>
> E:\>dir /s *tcl*.dll
> The volume in drive E has no label
>
>
> E:\VMD
>
> 2009-01-30 11:26 809,984 tcl85.dll
> 2009-01-30 11:26 13,824 tcldde13.dll
> 2009-01-30 11:26 4,096 tclpip85.dll
> 2009-01-30 11:26 13,312 tclreg12.dll
> 4 files 841,216 bytes
>
> Total number of files:
> 4 files 841,216 bytes
> 0 directories 195,574,648,832 bytes free
>
> E:\>
>
> 2010/1/3 John Stone <johns_at_ks.uiuc.edu>
>
> Hi,
> From the information you've given below, it seems to me you're
> having problems due to a conflicting DLL. Can you check to see if
> you have any Tcl/Tk DLLs on your system besides those included with
> VMD? A number of people have recently encountered problems caused by
> other software packages that incorrectly install their Tcl/Tk libraries
> into the global search path, overriding the locally installed libraries
> used by VMD. Check for these like this and let me know what you find:
> cd c:\
> dir /s *tcl*.dll
> cd e:\
> dir /s *tcl*.dll
>
> Let me know what you find.
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Sun, Jan 03, 2010 at 10:41:03AM -0700, Guo Zhi wrote:
> > Hi John,
> >
> > I also did this in my first post.
> > But still the output was:
> >
> > E:\VMD>vmd -dispdev text
> > Info) VMD for WIN32, version 1.8.7 (August 1, 2009)
> > Info) http://www.ks.uiuc.edu/Research/vmd/
> > Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> > Info) Please include this reference in published work using VMD:
> > Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> > Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> > Info) -------------------------------------------------------------
> > Info) Multithreading available, 2 CPUs detected.
> > Info) Free system memory: 1493MB (72%)
> > Info) Detected 1 available CUDA accelerator:
> > Info) [0] GeForce 9500 GT 4 SM_1.1 @ 1.40 GHz, 511MB RAM,
> KTO, OIO
> > Info) Creating CUDA device pool and initializing hardware...
> >
> > E:VMD>
> >
> > as if nothing ever happened...
> >
> > 2010/1/3 John Stone <johns_at_ks.uiuc.edu>
> >
> > Hi,
> > From your description, it sounds to me like your problem is
> > either related to the graphics startup or that the problem might
> > be caused by a conflict with a DLL installed by another program
> > interfering with the ones used by VMD. One way to narrow this
> > down somewhat would be to run VMD in text mode and see if you
> > still encounter the crash. Do this as follows:
> >
> > Start a command shell (use the "run" item in the start menu if
> you're
> > running XP, and specify "cmd" as the name of the program).
> >
> > Once you have a command shell, do this and see what happens:
> >
> > C:\>
> > C:\>"Program Files\University of Illinois\VMD\vmd" -dispdev text
> > Info) VMD for WIN32, version 1.8.7 (August 1, 2009)
> > Info) http://www.ks.uiuc.edu/Research/vmd/
> > Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> > Info) Please include this reference in published work using VMD:
> > Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> > Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1,
> 33-38.
> > Info)
> -------------------------------------------------------------
> > Info) Multithreading available, 1 CPU detected.
> > Info) Free system memory: 529MB (51%)
> > Info) No CUDA accelerator devices available.
> > Info) No joysticks found. Joystick interface disabled.
> > Found 68 plugins or data handlers in directory
> > 'C:/Program Files/University of
> > Illinois/VMD/plugins/WIN32/molfile'.
> > vmd > quit
> > Info) VMD for WIN32, version 1.8.7 (August 1, 2009)
> > Info) Exiting normally.
> > C:\>
> > Cheers,
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> > On Sat, Jan 02, 2010 at 05:16:54PM -0700, Guo Zhi wrote:
> > > Hi VMD users,
> > >
> > > I just downloaded vmd 1.8.7 and can not even start it on
> my
> > system.
> > > It aborted at very early stage, so very little
> information can
> > be
> > > achieved here.
> > >
> > > My system:
> > > CPU: AMD Athlon XP5000+
> > > RAM: 2GB
> > > Running Windows XP SP3
> > > Video card: nVidia Geforce
> 9500 GT,
> > 512MB
> > > RAM + Driver version (2009-11-20, 6.14.11.9562)
> > >
> > > I tried vmd 1.8.7CUDA/1.8.7/1.8.6, none of them worked.
> > >
> > > All these three have the same symptom, the first cmd
> window
> > flashed and
> > > faded away very quick. If typed in cmd window to start,
> > > either it accepted the command without any response(no
> output),
> > or just
> > > output the copyright information:
> > >
> > > Info) VMD for WIN32, version 1.8.7 (August 1, 2009)
> > > Info) http://www.ks.uiuc.edu/Research/vmd/
> > > Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> > > Info) Please include this reference in published work using
> VMD:
> > > Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD -
> Visual
> > > Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1,
> 33-38.
> > > Info)
> -------------------------------------------------------------
> > > Info) Multithreading available, 2 CPUs detected.
> > > Info) Free system memory: 1437MB (70%)
> > > Info) Detected 1 available CUDA accelerator:
> > > Info) [0] GeForce 9500 GT 4 SM_1.1 @ 1.40 GHz, 511MB
> RAM,
> > KTO, OIO
> > > Info) Creating CUDA device pool and initializing hardware...
> > >
> > > and then exit, the graphics rendering windows was never
> started.
> > >
> > > If typed in "vmd -debug", still the same symptom.
> > >
> > > No idea about how to solve this problem. If you need more
> > information to
> > > diagnose, please point it out, thanks!
> > >
> > > Guo
> >
> > --
> > NIH Resource for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> >
> > --
> > Zhi Guo
> > Graduate Student
> > Center for Bio-Optical Nanotechnology
> > Arizona State University
> > PO Box 875201 Tempe, AZ 85287-5201
> > Phone (480) 965-8162 (Bio Lab)
> > (480)727-0124 (Laser Lab)
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>
> --
> Zhi Guo
> Graduate Student
> Center for Bio-Optical Nanotechnology
> Arizona State University
> PO Box 875201 Tempe, AZ 85287-5201
> Phone (480) 965-8162 (Bio Lab)
> (480)727-0124 (Laser Lab) 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078