From: Ban Arn (ban.arn_at_gmail.com)
Date: Tue Mar 27 2012 - 11:55:24 CDT

Dear VMD users

Recently, I came across the below link and tried to calculate secondary
structures for trajectory frames using the tcl script given in the link.

link:
http://nefeli.mbg.duth.gr/cgi-bin/wiki.pl/Secondary_structure_analysis_of_protein_trajectories

The script uses vmd for calculation.

The first step works fine and i got the output ss_traj.dat.

In the second step, it shows that using ss_plot it converts ss_traj.dat
into post script file.

While using command ss_plot <ss_traj.dat> test.ps, i'm getting error as
ss_plot command doesnt found.

I copied & pasted the source code for ss_plot.c in the working directory,
still i'm running out of the same problem.

Kindly advice.

Many Thanks
Balaji