VMD-L Mailing List

From: Dr. Daniel James White PhD (dan_at_chalkie.org.uk)
Date: Wed Jan 12 2005 - 06:36:57 CST

Hi John and Axel

here is some more informationa bout the insightII cshrc
that makes vmd crash on linux

might hold the key?

cheers

Dan

Begin forwarded message:

>
>> also I have noticed that the insightII cshrc file causes VMD to crash.
>> to run VMD I have to disable the source accelrys cshrc line in my
>> .cshrc for VMD to launch.
>>
>> this means there is some thing bad in the accelrys cshrc which is
>> bombing the c shell somehow..............
>
> The .cshrc is mainly just defining some environment variables.
> At least the following ones are defined or changed.
>
> BCL
> BIOSYM
> BIOSYM_CONTEXT
> BIOSYM_LIBRARY
> BIOSYM_PLATFORM
> BIOSYM_ROOT
> DELPHIDATA
> FASTLIBS
> FORCEFIELD
> INSIGHT_POTENTIAL_TEMPLATES
> LD_LIBRARY_PATH
> LD_ASSUME_KERNEL
> LM_LICENSE_FILE
> MSI_LICENSE_FILE
> MSI_LIC_PACK_DIR
> MSI_LIC_PLATFORM
> MSI_LIC_WEBLAB_LOG
> PATH
> RESIDUE_LIBRARY
> STEREO_DEVICE
> STEREO_TRIGGER
>
> If VMD uses some of these variables, then it may be the source of the
> errors. I guess the LD_ASSUME_KERNEL might by the most potential
> candidate, if VMD wants to use LD_ASSUME_KERNEL 2.4.20 and
> insight 2.4.19.
>
Dr. Daniel James White BSc. (Hons.) PhD
Bioimaging Coordinator
Nanoscience Centre and
Department of Biological and Environmental science
Division of Molecular Recognition
Ambiotica C242
PO Box 35
University of Jyväskylä
Jyväskylä FIN 40014
Finland
+358 14 260 4183 (work)
+358 468102840 (mobile)

http://www.chalkie.org.uk
dan_at_chalkie.org.uk
white_at_cc.jyu.fi