From: Axel Kohlmeyer (axel.kohlmeyer_at_theochem.ruhr-uni-bochum.de)
Date: Tue Jul 20 2004 - 17:39:02 CDT

On Tue, 20 Jul 2004, Luciano wrote:

LT>
LT> I read a structure of polymer box (*.xyz file, type Tinker) in other
LT> viewer package, but I had problem with vmd:

hi,

the tinker version of the .xyz file format is somewhat different
to the .xyz format, that VMD expects. please use the xyzpdb converter
that is part of the tinker package to convert the .xyz file into
a pdb file that vmd can understand.

axel.

LT>
LT>
LT> Multithreading available, 1 CPU detected.
LT> Info) OpenGL renderer: Mesa X11
LT> Info) Features: STENCIL RN MTX TCM
LT> Info) Textures: 2-D (2048x2048), 3-D (256x256x1), Multitexture (8)
LT> vmd > Info) Using plugin xyz for structure file peo12.xyz
LT> xyz structure) missing type or coordinate(s) in file 'peo12.xyz' for
LT> atom '1'
LT> ERROR) molecule_structure: Unable to read structure for molecule 0
LT> Info) Using plugin xyz for coordinates from file peo12.xyz
LT> xyz timestep) missing type or coordinate(s) in file 'peo12.xyz' for atom '1'
LT> Info) Finished with coordinate file peo12.xyz.
LT> Info) Analyzing structure ...
LT> Info) Atoms: 85
LT> Info) Residues: 85
LT> Info) Waters: 0
LT> Info) Segments: 0
LT> Info) Fragments: 85 Protein: 0 Nucleic: 0
LT>
LT> What mean this ERROR ?! What do I do, please?!
LT>
LT> thanks in advance!!
LT>
LT>
LT>
LT>
LT> ######################################################
LT> Luciano Tavares da Costa
LT> Mestre em Engenharia Química
LT> icq #232852036 ; ltcosta_at_universiabrasil.net
LT> Doutorando Laboratório de Espectroscopia Molecular
LT> Instituto de Química - USP
LT>
LT> ######################################################
LT>
LT>
LT> -----------------------------------------------------------------------
LT> Universia Brasil. Em todas as fases da vida acadêmica.
LT> Acesse o portal e confira nossos serviços e benefícios:
LT> www.universiabrasil.net
LT>
LT>
LT>
LT>

-- 
=======================================================================
Dr. Axel Kohlmeyer                        e-mail: axel.kohlmeyer_at_rub.de
Lehrstuhl fuer Theoretische Chemie          Phone: ++49 (0)234/32-26673
Ruhr-Universitaet Bochum - NC 03/53         Fax:   ++49 (0)234/32-14045
D-44780 Bochum  http://www.theochem.ruhr-uni-bochum.de/~axel.kohlmeyer/
=======================================================================