From: Rejwan (rejwan_88_at_yahoo.com)
Date: Mon Jun 17 2013 - 10:34:32 CDT

Hi,

I have a protein embeded in POPC membrane. The membrane has been built by VMD membrane plug-in. I want to make topology in Amber using LEAP. However, the VMD POPC lipid residues have incompatibility with Amber/Leap lipid residue naming. I am using lipid11 forcefield in Amber. Is there any script available for making compatible VMD POPC in Leap/Amber ? Thank you.

Rejwan Ali
Mount Sinai