VMD-L Mailing List

From: Nguyen Hoang Phuong (phuong_at_theochem.uni-frankfurt.de)
Date: Tue Sep 16 2003 - 02:22:36 CDT

> Hi
>
> Are you using suse linux?
>
>
> try using g++ in the makefile...instead of gcc
>
>
> Brian
>
> On Fri, 12 Sep 2003, John Stone wrote:
>

Dear Brian,

thanks for help. I'm using suse linux. The results of the using of g++:

g++ -O Trio.C MDFile.o MDFile_I.o MDFile_O.o MDFile_GRO.o MDFile_G96.o
MDFile_TRR.o MDFile_PDB.o MDFile_DCD.o -o trio
/tmp/cc2sq1TW.o: In function `main':
/tmp/cc2sq1TW.o(.text+0x6c2): undefined reference to
`MDFile_I::read_step(md_timestep*, md_structure*)'
/tmp/cc2sq1TW.o(.text+0x6f3): undefined reference to
`free_traj(md_timestep*)'
/tmp/cc2sq1TW.o(.text+0x740): undefined reference to
`free_traj(md_timestep*)'
/tmp/cc2sq1TW.o(.text+0x783): undefined reference to
`MDFile_O::write_step(md_timestep*, md_structure*)'
/tmp/cc2sq1TW.o(.text+0x7d4): undefined reference to
`MDFile_O::write_step(md_timestep*, md_structure*)'
/tmp/cc2sq1TW.o(.text+0x80f): undefined reference to
`MDFile_O::write_step(md_timestep*, md_structure*)'
/tmp/cc2sq1TW.o(.text+0x886): undefined reference to
`free_traj(md_timestep*)'
collect2: ld returned 1 exit status
make: *** [trio] Error 1

Did it work well for you?

Phuong

> >
> > Hi,
> > I've got no idea what the cause of that error is, I've never
> > seen it before. Have you succesfully compiled any other programs
> > on your machine? That error looks like some problem with gcc itself...
> > Has anyone else seen this error before?
> >
> > Thanks,
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> >
> > On Fri, Sep 12, 2003 at 03:19:38PM +0200, Nguyen Hoang Phuong wrote:
> > >
> > > Dear All,
> > >
> > > I have downloaded the trio program and tried to compile it. I just run:
> > >
> > > make
> > >
> > > and then I got the error:
> > >
> > > gcc -O Trio.C MDFile.o MDFile_I.o MDFile_O.o MDFile_GRO.o MDFile_G96.o
> > > MDFile_TRR.o MDFile_PDB.o MDFile_DCD.o -o trio
> > > /tmp/ccyuZG1y.o(.eh_frame+0x12): undefined reference to
> > > `__gxx_personality_v0'
> > > MDFile_I.o(.eh_frame+0x12): undefined reference to `__gxx_personality_v0'
> > > MDFile_O.o(.eh_frame+0x12): undefined reference to `__gxx_personality_v0'
> > > MDFile_GRO.o(.eh_frame+0x11): undefined reference to
> > > `__gxx_personality_v0'
> > > MDFile_G96.o(.eh_frame+0x11): undefined reference to
> > > `__gxx_personality_v0'
> > > MDFile_TRR.o(.eh_frame+0x11): more undefined references to
> > > `__gxx_personality_v0' follow
> > > collect2: ld returned 1 exit status
> > > make: *** [trio] Error 1
> > >
> > > Can anyone help me how to solve this?
> > >
> > > Thank you very much in advance.
> > >
> > > Phuong
> > >
> > >
> >
> >
>
> --
> *****************************************************************
> **Brian Bennion, Ph.D. **
> **Computational and Systems Biology Division **
> **Biology and Biotechnology Research Program **
> **Lawrence Livermore National Laboratory **
> **P.O. Box 808, L-448 bennion1_at_llnl.gov **
> **7000 East Avenue phone: (925) 422-5722 **
> **Livermore, CA 94550 fax: (925) 422-6605 **
> *****************************************************************
>
>
>