VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Oct 17 2007 - 21:56:39 CDT

Hi,
  Have you seen the RMSD-per-residue example scripts that
are included in (as I recall) some of the VMD and NAMD tutorials?
I would suggest having a look at those, as I think there's already
a script that does what you want.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Oct 10, 2007 at 12:09:22PM -0600, Zhaochuan Shen wrote:
> Hi all,
>
> When using vmd plugin RMSD Trajectory Tool, I want to scan rmsd of different
> residues, such as, alpha carbon of Residue 100, alpha carbon of Residue 101,
> alpha carbon of Residue 102... Now I only can change the description
> manually, very painful for a protein with hundreds of residues. Do you know
> any better way to do that? Thanks.
>
> Wishes,
> Zhaochuan 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
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