From: John Stone (
Date: Wed Nov 06 2013 - 10:37:51 CST

  Use an atom selection for the sites of interest instead of the default
selection of "all". If you're not familiar with VMD atom selections yet,
I would recommend that you work through the VMD tutorials.

  John Stone

On Wed, Nov 06, 2013 at 07:01:15PM +0330, Marzieh Dehghan wrote:
> Dear users,
> 1- after protein-protein docking , I want to use ramachandran plot to
> know the amount of secondary structures in the interaction sites, how to
> use ramachandran plot that just shows all secondary structures in the
> interaction sites not all molecules.
> thanks in advance

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