VMD-L Mailing List

From: Vani Krishna (vakri2002_at_yahoo.com)
Date: Thu Dec 09 2004 - 10:20:37 CST

John:
Thanks for the info. I have downloaded the new
version. Just a quick question, what definition is
used for van der Waal's radii to 'measure sasa'.? I
was looking at some information and there were couple
of options: radii by Lee & richards; Radii by Chothia.

Thanks
VAni

--- John Stone <johns_at_ks.uiuc.edu> wrote:

>
> You can try the new "measure sasa" command found in
> the test
> version of VMD 1.8.3 available here:
> http://www.ks.uiuc.edu/Research/vmd/alpha
>
> John Stone
> vmd_at_ks.uiuc.edu
>
>
> On Wed, Dec 08, 2004 at 04:07:55PM -0800, Vani
> Krishna wrote:
> >
> > Hello:
> >
> > Is there a script/method to calculate the solvent
> > accessable surface area in VMD? Any helpful
> > suggestions would be appreciated
> >
> > Thanks
> > Vani
> >
> >
> >
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