VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Wed Mar 09 2011 - 04:17:56 CST

• Next message: Axel Kohlmeyer: "Re: how to make default background color to white"
• Previous message: Sushil Mishra: "Re: how to make default background color to white"
• In reply to: vani panguluri: "ERROR"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

On Wed, Mar 9, 2011 at 1:11 AM, vani panguluri <vanipanguluri_at_gmail.com> wrote:
>
> Hi all,
> while converting the amber topology file .prmtop to psf i am  getting an
> error anybody can help me
>>Main< (apocynin1) 12 % mol new pdb1k4u_apo11.prmtop waitfor all
> 3
>>Main< (apocynin1) 13 % animate dup 0

here is the problem. this has to be either
animate dup 3
or
animate dup top

axel.

>>Main< (apocynin1) 14 % set sel [atomselect top all]
> atomselect1
>>Main< (apocynin1) 15 % $sel writepsf pdb1k4u_apo11.psf
> atomsel: frame -1 out of range for molecule 3
> Thanks & Regards,
> Vani

-- 
Dr. Axel Kohlmeyer
akohlmey_at_gmail.com  http://goo.gl/1wk0
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.

• Next message: Axel Kohlmeyer: "Re: how to make default background color to white"
• Previous message: Sushil Mishra: "Re: how to make default background color to white"
• In reply to: vani panguluri: "ERROR"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]