VMD-L Mailing List

From: Shirley Li (li19104_at_yahoo.com)
Date: Mon Aug 07 2006 - 12:01:05 CDT

Dear VMD expert,
   
  I have some questions about VMD/APBS.
   
  For the .dx file generated from APBS, instead of showing the isosurface of each atom of the entire protein which makes the graphic too noisy, is there any selection tool in VMD which allows for the display of ONLY CENTAIN REGIONS, say within 6 angstroms of the ligand or the center?
   
  Another question, what does the isovalue exactly mean? Say, one choose an isovalue of 1.0, does it allow to show grid points with value greater than, or less than, or equal to isovalue?
   
  Thanks in advance.
   
  Shirley
   
   

                 
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