VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jan 14 2016 - 15:50:29 CST

Hi,
  Delete "MESA" from your configuration, and start over, and hopefully
that will eliminate the major issues you listed below.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Jan 14, 2016 at 10:40:53PM +0100, Munir Ahmad wrote:
> Hi,
> I'm trying to compile VMD from source with following options:
>
> LINUXAMD64 OPENGL MESA FLTK TK CUDA VRPN TCL PTHREADS
>
> A Compilation ends with a simple error without any details. Here is the
> log
>
> LinkingA vmd_LINUXAMD64 ...
>
> OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::~OpenGLDisplayDevice()':
>
> OpenGLDisplayDevice.C:(.text+0x0): multiple definition of
> `OpenGLDisplayDevice::~OpenGLDisplayDevice()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x0): first defined
> here
>
> OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::~OpenGLDisplayDevice()':
>
> OpenGLDisplayDevice.C:(.text+0x0): multiple definition of
> `OpenGLDisplayDevice::~OpenGLDisplayDevice()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x0): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::queue_events()':
>
> OpenGLDisplayDevice.C:(.text+0xa0): multiple definition of
> `OpenGLDisplayDevice::queue_events()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xa0): first defined
> here
>
> OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::do_reposition_window(int, int)':
>
> OpenGLDisplayDevice.C:(.text+0x340): multiple definition of
> `OpenGLDisplayDevice::do_reposition_window(int, int)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x340): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::x()':
>
> OpenGLDisplayDevice.C:(.text+0x360): multiple definition of
> `OpenGLDisplayDevice::x()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x360): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::y()':
>
> OpenGLDisplayDevice.C:(.text+0x3c0): multiple definition of
> `OpenGLDisplayDevice::y()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x3c0): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::shift_state()':
>
> OpenGLDisplayDevice.C:(.text+0x420): multiple definition of
> `OpenGLDisplayDevice::shift_state()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x420): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::set_cursor(int)':
>
> OpenGLDisplayDevice.C:(.text+0x4a0): multiple definition of
> `OpenGLDisplayDevice::set_cursor(int)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x4a0): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::reshape()':
>
> OpenGLDisplayDevice.C:(.text+0x4d0): multiple definition of
> `OpenGLDisplayDevice::reshape()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x4d0): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::readpixels(int&,
> int&)':
>
> OpenGLDisplayDevice.C:(.text+0x620): multiple definition of
> `OpenGLDisplayDevice::readpixels(int&, int&)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x620): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::update(int)':
>
> OpenGLDisplayDevice.C:(.text+0x6b0): multiple definition of
> `OpenGLDisplayDevice::update(int)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x6b0): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::spaceball(int*,
> int*, int*, int*, int*, int*, int*)':
>
> OpenGLDisplayDevice.C:(.text+0x700): multiple definition of
> `OpenGLDisplayDevice::spaceball(int*, int*, int*, int*, int*, int*, int*)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x700): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::read_event(long&,
> long&)':
>
> OpenGLDisplayDevice.C:(.text+0x780): multiple definition of
> `OpenGLDisplayDevice::read_event(long&, long&)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x780): first defined
> here
>
> OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::do_resize_window(int, int)':
>
> OpenGLDisplayDevice.C:(.text+0xbb0): multiple definition of
> `OpenGLDisplayDevice::do_resize_window(int, int)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xbb0): first defined
> here
>
> OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::~OpenGLDisplayDevice()':
>
> OpenGLDisplayDevice.C:(.text+0xd80): multiple definition of
> `OpenGLDisplayDevice::~OpenGLDisplayDevice()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xd80): first defined
> here
>
> OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::OpenGLDisplayDevice()':
>
> OpenGLDisplayDevice.C:(.text+0xe30): multiple definition of
> `OpenGLDisplayDevice::OpenGLDisplayDevice()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xe30): first defined
> here
>
> OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::OpenGLDisplayDevice()':
>
> OpenGLDisplayDevice.C:(.text+0xe30): multiple definition of
> `OpenGLDisplayDevice::OpenGLDisplayDevice()'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xe30): first defined
> here
>
> OpenGLDisplayDevice.o: In function
> `OpenGLDisplayDevice::open_window(char*, int*, int*, int, char**)':
>
> OpenGLDisplayDevice.C:(.text+0xf90): multiple definition of
> `OpenGLDisplayDevice::open_window(char*, int*, int*, int, char**)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0xf90): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::init(int, char**,
> VMDApp*, int*, int*)':
>
> OpenGLDisplayDevice.C:(.text+0x1fc0): multiple definition of
> `OpenGLDisplayDevice::init(int, char**, VMDApp*, int*, int*)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x1fc0): first defined
> here
>
> OpenGLDisplayDevice.o: In function `OpenGLDisplayDevice::prepare3D(int)':
>
> OpenGLDisplayDevice.C:(.text+0x20d0): multiple definition of
> `OpenGLDisplayDevice::prepare3D(int)'
>
> OpenGLDisplayDevice.o:OpenGLDisplayDevice.C:(.text+0x20d0): first defined
> here
>
> Stride.o: In function `ss_from_stride(DrawMolecule*)':
>
> Stride.C:(.text+0x52): warning: the use of `tempnam' is dangerous, better
> use `mkstemp'
>
> collect2: error: ld returned 1 exit status
>
> make: *** [vmd_LINUXAMD64] Error 1
>
> Any help would be highly appreciated.
>
> Munir 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/