VMD-L Mailing List

From: Teletchéa Stéphane (steletch_at_biomedicale.univ-paris5.fr)
Date: Fri Jun 20 2003 - 06:36:12 CDT

Le ven 20/06/2003 à 12:08, Vlad Cojocaru a écrit :
> Dear vmd-ers,
> I am wondering if there is a script somewhere that can visualize the
> output generated by CURVES (nucleic acid structure analyzer) using VMD.
> The pdb file generated by Curves can be seen with RASMOL but not with
> VMD. If somebody has some experience with this I would be greatful for
> an advice.
> Best wishes,
> Vlad
>

You cannot see it as clearly as you see it in rasmol but by chnging the
representation mode (trace, licorice, VdW, ...) you'll get its shape.

Helpfull enough i think.
But most important informations are in the lis file, section I (Global
Axis Curvature), where you get the angle and direction of the curvature.

Stef 

-- 
*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*
Teletchéa Stéphane - CNRS UMR 8601
Lab. de chimie et biochimie pharmacologiques et toxicologiques
45 rue des Saints-Pères 75270 Paris cedex 06
tél : (33) - 1 42 86 20 86 - fax : (33) - 1 42 86 83 87
mél : steletch_at_biomedicale.univ-paris5.fr
*~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~*
Linux 2.4.19-32mdk #1 Tue Mar 25 20:45:38 MST 2003
1:00pm up 53 days, 1:37, 5 users, load average: 1.00, 1.02, 1.00