From: Chris Harrison (charris5_at_gmail.com)
Date: Tue Sep 11 2012 - 04:41:16 CDT

Look here:

http://www.ks.uiuc.edu/Training/Tutorials/

http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/

Chris

BIO MED <chembiomed_at_yahoo.com> writes:
> Date: Tue, 11 Sep 2012 01:53:07 -0700 (PDT)
> From: BIO MED <chembiomed_at_yahoo.com>
> To: "vmd-l_at_ks.uiuc.edu" <vmd-l_at_ks.uiuc.edu>
> Subject: vmd-l: tutorial
> Reply-To: BIO MED <chembiomed_at_yahoo.com>
> X-Mailer: YahooMailWebService/0.8.121.416
>
> hello!
>
> I havent find a good VMD tutorial. I cant find anywhere, examples to do these actions:
>
> select specific atoms (based on various criteria, like specifically hydrogen atoms, hydrophile atoms or subunits of the molecule, etc)
>
> the documentation is not clear, not complete and has few if any, examples
>
> can you fix that?
>
> can you help me with my specific request?
>
> thanks!

Best,
Chris

--
Chris Harrison, Ph.D.
NIH Center for Macromolecular Modeling and Bioinformatics
Theoretical and Computational Biophysics Group
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
http://www.ks.uiuc.edu/Research/namd       Voice: 773-570-6078
http://www.ks.uiuc.edu/~char               Fax:   217-244-6078