VMD-L Mailing List

From: Sunita Patel (spatel_at_iitb.ac.in)
Date: Fri Nov 03 2006 - 10:14:20 CST

Dear vmd-users,

How to align two peptide molecules containing different atoms using vmd?
One of the peptide is in hairpin conformation and the other peptide is the
turn of the hairpin but is obtained from different simulation.

The calculated RMSD between the two peptides is only 0.37 Angstrom.

With best regards,
Sunita