VMD-L Mailing List

From: Mengjuei Hsieh (mjhsieh_at_gmail.com)
Date: Mon Dec 05 2005 - 19:59:12 CST

Hi John,
After setting it to -1 to 1 the surface is still staying dark. I ampretty sure that there is nothing fishy in the data since I candisplay correct color in pymol. Also I could not find where can I setthe color flavor to RWB because there seems no 'Volume' object in thecolor setting panel.
Thanks for your help.--Mengjuei
On 12/5/05, John Stone <johns_at_ks.uiuc.edu> wrote:> Hi,> I'd try a color scale data range of -5 to 5 or something like that to start> with, and then adjust to match the actual range that's physically interesting> in your particular system. (you'll want to know what the physically meaningful> range of values output by Delphi/APBS/UHBD/etc is so that the colors mean> something to you when you see them within VMD. Making the color scale range> smaller (-1 to 1) increases the color contrast. You can also change the> color scale to something that's more appropriate for potential maps, say> the RWB color scale.