From: Axel Kohlmeyer (
Date: Mon Jul 28 2008 - 13:52:42 CDT

On Mon, 28 Jul 2008, Rudra Banerjee wrote:

RB> As a beginner with NAMD, i am puzzelesd over how i can fix the atom position!

so you should post to the NAMD mailing list! this is vmd-l.

RB> i have Glu residue solvated in water. Now i want glutamines to be
RB> fixed. so if i use fixedAtoms tag on, what shoud i put in the
RB> fixedAtomfiles? the PDB file name of the gultamine?

RB> plz help

_please_ read the documentation and check out the tutorials
and then you can help yourself.



Axel Kohlmeyer
   Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
If you make something idiot-proof, the universe creates a better idiot.