VMD-L Mailing List

From: Gregorio Alanislobato (gregorio.alanislobato_at_kaust.edu.sa)
Date: Mon Aug 16 2010 - 20:29:13 CDT

Hi everyone,

I've got two coarse grained proteins with 130 atoms each and no matter what
selection I type in the RMSD calculator, I obtain the message "Selection
contains no atoms. RMSD calculation not possible". What can be wrong?

Thanks again.

Regards, 

-- 
Gregorio Alanís Lobato, BSc
4700 KAUST Mail Box: 1899
Thuwal 23955–6900, KSA
Student ID: 100037943
Badge #: 101969
Mobile Phone: +966-564-75-14-14
e-mail: gregorio.alanislobato_at_kaust.edu.sa
On 16 August 2010 14:58, Mert Gür <gurmert_at_gmail.com> wrote:
> Dear Gregorio,
> Type "name CA" instead of "protein" in the RMSD plugin
> Best,
> Mert
>
> On Mon, Aug 16, 2010 at 8:13 PM, Gregorio Alanislobato
> <gregorio.alanislobato_at_kaust.edu.sa> wrote:
> > Hi,
> >
> > I would like to measure the RSMD between two coarse grained molecules but
> > VMD keeps saying it is not possible. Do anyone know of a way to do this?
> >
> > Thanks in advance.
> >
> > Regards,
> > --
> > Gregorio Alanís Lobato, BSc
> > 4700 KAUST Mail Box: 1899
> > Thuwal 23955–6900, KSA
> > Student ID: 100037943
> > Badge #: 101969
> > Mobile Phone: +966-564-75-14-14
> > e-mail: gregorio.alanislobato_at_kaust.edu.sa
> >
>