VMD-L Mailing List

From: Ravinder Abrol (abrol_at_wag.caltech.edu)
Date: Thu Apr 13 2006 - 06:32:50 CDT

Thanks John.
I have VMD 1.8.4b7 for Windows and I didn't find rmsdtt in the extensions.
But I downloaded it and put it in the plugins folder .../plugins/WIN32. I
still cannot find rmsdtt in extensions. The only way I can run rmsdtt is
by using the TkConsole to go to the plugins folder where I saved the
rmsdtt plugin and typing rmsdtt.
Is there an easier way and how do I make it appear in the Extensions?
Thanks,
Ravi

--------------------------------------
On Mon, 10 Apr 2006, John Stone wrote:

>
> You could use RMS fitting to align all of the frames with the first one
> to eliminate the drift. The "rmsdtt" plugin by Luis Gracia will do this
> for you quite easily, or you can use a Tcl script to do this yourself with
> the 'measure fit' command etc.
>
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Fri, Apr 07, 2006 at 07:26:52PM -0700, Ravinder Abrol wrote:
> > Hi All,
> > I have a long trajectory in which the protein shows a slow but visible
> > drift. I want to save its movie without the drift by using move on each
> > frame to align it to the first frame. How can I do this?
> > Thanks,
> > Ravi
> >
> > --
> > ________________________________________________
> >
> > Ravinder Abrol
> > 139-74, Beckman Institute
> > Division of Chemistry and Chemical Engineering
> > Caltech, Pasadena, CA 91125
> > Phone: 1.626.395.8143
> > Fax: 1.626.585.0917
> > Email: abrol_at_wag.caltech.edu
> > ________________________________________________
> >
>
> 

-- 
________________________________________________
 Ravinder Abrol
 139-74, Beckman Institute
 Division of Chemistry and Chemical Engineering
 Caltech, Pasadena, CA 91125
 Phone: 1.626.395.8143
   Fax: 1.626.585.0917
 Email: abrol_at_wag.caltech.edu
________________________________________________