VMD-L Mailing List

From: Lubos Vrbka (lists_at_vrbka.net)
Date: Thu Feb 08 2007 - 06:16:59 CST

hi,

> Is it possible to compute accessible surface area of single amino acid with any software?
if you want to measure sasa, you can do it with measure sasa command
available in vmd (consult vmd documentation for details).

i also wrote a script that calculates sasa separately for every residue
of a given selection - you can download it (together with the
documentation) here:
http://lubos.vrbka.net/misc.html
its name is SASARes.

regards, 

-- 
Lubos _@_"
http://www.lubos.vrbka.net