VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Sep 06 2002 - 15:39:07 CDT

Dear Nicolas,
  Do you have an example file that causes the problem you
describe? If so, please email me a small file and I'll see if
I can figure anything out on it. It may simply be a limitation of
Babel itself, but if you can provide me with a file exhibiting the
problems I can find out what the cause is.

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Aug 30, 2002 at 10:54:19AM +0100, Nicolas Foloppe wrote:
> Dear all,
>
> Whenever I want to load a structure in CHARMm
> format in VMD (version 1.61a3, for IRIX) for
> graphical inspection, the structure is clearly
> messed up (although the original coordinates are
> OK). I don't know much about what happens behind
> the scene with VMD, but I suspect that it has to
> do with a problem with babel. Has anybody else
> experienced that ? Is there a simpler/better
> solution than to go and tinker babel's code ? I
> cannot find a recent verion of babel.
>
> Help/comments would be appreciated.
>
> Nicolas
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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