VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue May 24 2005 - 11:12:22 CDT

Hi,
  Can you provide copies of the files you're having problems with so I can
inspect them? Which version of VMD and what MD simulation package were
you using with these files?

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Sun, May 22, 2005 at 10:28:16PM -0500, Baoqiang Cao wrote:
> Dear all,
>
> After equilibrate the system working on, I tried to analyze the final coordinates. Unfortunately, when I used,
> "vmd -psf mypsf.psf"
> then load coordinate to it by select equil_out.coor, which is the output file for my final coordinates, I got a error message says "inconsistent atom count in file 'equil_out.coor'". "mypsf.psf" was used in equilibration and should not be changed after all. What is the problem? Thanks.
>
> Best,
> Baoqiang Cao 

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NIH Resource for Macromolecular Modeling and Bioinformatics
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