VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Nov 28 2005 - 11:21:49 CST

Hi,
  I think that doing what others suggested is the best thing in the short
term, but I wanted to mention that I now have CONECT record reading in the
VMD PDB reader, and I'm working on making it do the right thing since most
PDB files only have CONECT records for a small subset of the bonds in the
system (usually only the unusual ones). I've got a bit more work to do, but
when it's done this will "just work", in the future.

  John

On Tue, Nov 22, 2005 at 02:03:52PM +0100, andrea spitaleri wrote:
> Hi all,
> I have a file.pdb with CONECT flag at the end giving the S-S connection
> atom numbers. While in pymol or insight I can see the S-S bond,
> in vmd it doesn't appear at all. I am wondering if it is a problem of
> cutoff since the dist is quite large (0.25nm).
> Any help??
>
> Regards,
> Andrea
> --
> -------------------------------
> Andrea Spitaleri
> Dulbecco Telethon Institute
> c/o DIBIT Scientific Institute
> Biomolecular NMR, 1B4
> Via Olgettina 58
> 20132 Milano (Italy)
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NIH Resource for Macromolecular Modeling and Bioinformatics
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