VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Sep 07 2018 - 14:28:17 CDT

You just need to come up with two atom selections that precisely specify
that two sets of components you want to independently measure RMSD for,
and it should be straightforward. Read the VMD User's Guide and/or work
through the tutorials to become more familiar with the selection language.

Best,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Sep 05, 2018 at 08:12:29PM +0530, abhik.ghosh_at_bose.res.in wrote:
>
>
> Dear All
> I want to plot RMSD for both side chain and main chain of the residues of
> specific protein from my pdb data. How it can be done?
> Any suggestion is welcome.
> Regards
> Abhik 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/