From: Paul Grayson (pgrayson_at_ks.uiuc.edu)
Date: Wed Mar 20 2002 - 13:31:50 CST

> I set new {x y z} for an atom, could I save this change to .pdb file
> via VMD?

Yes, with the tcl commands

  set sel [atomselect top "all"]
  $sel writepdb "newfile.pdb"

You can replace "all" by a detailed selection to save a subset of your
molecule. Let us know if you need more help!

-Paul Grayson