VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Apr 06 2006 - 14:29:42 CDT

Hi,
  Which version of VMD are you running, and was this a periodic
or non-periodic simulation?

Thanks,
  John

On Thu, Apr 06, 2006 at 02:20:33PM -0500, vvenditti_at_biochem.wisc.edu wrote:
> Dear all,
> I runnea a MD simulation of a small using AMBER 8, but when I try to
> display the trajectory using VMD the first residue is messed and the
> softaware give me the following warinig in the shell:
>
> Unusual bond between residues: 1 (none) and 2 (nucleic)
>
> How may I do to overcome this problem?
> Thanks in advance,
> Vincenzo 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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