VMD-L Mailing List

From: Sanjeev B.S. (sanjeev_at_mbu.iisc.ernet.in)
Date: Thu Mar 04 2004 - 00:11:31 CST

I downloaded that pdb file to my local machine and gunzipped it first
however, how did you try to load it into VMD?
+++ Downloaded 1sva.pdb1.gz, renamed as 1sva.pdb.gz, unzipped and then
vmd 1sva.pdb. It loaded as an animation (60 frames) on v1.8.2. I am not
sure why it loads as a single PDB in your case.

This reminds me of another problem that I face... I have superimposed a
set of PDBs and wanted to view them. Despite a TER card between them
bonds were seen between different molecues. Is there a way by which this
could be done, that is to get bonds between the appropriate molecules
only?