VMD-L Mailing List

From: Souvik Sinha (souvik.sinha893_at_gmail.com)
Date: Mon Aug 14 2017 - 03:59:07 CDT

Hi,
I have a query regarding the suboptimal path calculation between 2 nodes
using NetworkView plugin.

There is an option to provide 'edge length offset' value during the
'subopt' calculation. A value of 20 is given in the "Dynamical
Network Analysis"
tutorial. Here, I think this value may vary along different systems and
change in the value will reflect in the number of subopt pathways between
the nodes of interest. So, is there any specific guidelines to set what
kind of values can be used?

Thanks. 

-- 
Souvik Sinha
Research Fellow
Bioinformatics Centre (SGD LAB)
Bose Institute
Contact: 033 25693275