VMD-L Mailing List

From: Peter Hamm (phamm_at_pci.unizh.ch)
Date: Mon Apr 03 2006 - 08:01:57 CDT

Hi

When I try to load the attached cube file into VMD, I get a warning:

WARNING: Coordinates will be rotated to comply
with VMD's convention for periodic display...

Even more so, when I combine more than one of such file to a
trajectory, that rotation is different for each file. I am an absolute
newcomer to VMD, but this just doesn't make sense to me. Does
anybody have an idea how to avoid this?

Many thanks in advance

Peter Hamm

---------------------------------------------------------
Peter Hamm
Physikalisch Chemisches Institut
Universität Zürich
Winterthurerstr. 190
CH-8057 Zürich
Switzerland
Tel: ++41/1/63 54431
Fax: ++41/1/63 56838

The following section of this message contains a file attachment
prepared for transmission using the Internet MIME message format.
If you are using Pegasus Mail, or any other MIME-compliant system,
you should be able to save it or view it from within your mailer.
If you cannot, please ask your system administrator for assistance.

   ---- File information -----------
     File: out0.cube
     Date: 3 Apr 2006, 11:31
     Size: 438910 bytes.
     Type: Unknown


  • Application/Octet-stream attachment: out0.cube