VMD-L Mailing List

From: Maria Sanchez Farran (MFarran_at_engr.psu.edu)
Date: Wed Apr 02 2008 - 07:49:55 CDT

Hi,

 

I am a new user of VMD and NAMD.I am now following the NAMD tutorial.
Currently, I am trying to do the RMSD analysis of the simulation of
ubiquitin in a water sphere. I loaded the ubq_ws.psf and ubq_ws_eq.dcd
files in VMD and typed source rmsd.tcl in the Tk console. The file
rmsd.dat is created but it has no data in it (0 kB). I am now a kind of
stuck in this part. Also, I've realized that sometimes after typing
source rmsd.tcl in the console and pressing enter, the VMD window
suddenly closes.

Please, can you help me if you have any idea about why is this
happening?

 

Thank you very much!,

 

Maria Antonieta Sanchez