VMD-L Mailing List

From: Bill McIntyre (bill_mcintyre378_at_outlook.com)
Date: Sun Oct 22 2023 - 17:38:30 CDT

Hello everyone,

Would someone please kindly provide me with some direction on how to make a script to build cyclic peptides in VMD from a provided list of sequences? An output of PDB files for the sequences is sufficient (one separate PDB file per sequence).

I saw there was a discussion in a previous mail posting that touched on this subject (https://www.ks.uiuc.edu/Research/namd/mailing_list/namd-l.2015-2016/0961.html) but I didn't see any follow up that could guide me in doing this task. Thanks.

Bill McIntyre