From: Sujata Sovani (sujatas_at_scripps.edu)
Date: Wed Sep 01 2010 - 18:30:08 CDT

Hi,

I have two peptide fragments each with three identical chains in a helical arrangment. I have their structure as two PDB files. I want to join the two peptides into a larger molecule chain A C-ter of 1st to N-ter chain A of second and so on.
I tried using the Add/Remove bonds command but due to the helical nature of the chains, I can connect only one chain at a time and aligning the other two is difficult.

Is there a better way to achieve this? (editing the PDB/PSF files??)

Thanks,
Sujata