VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Fri Sep 14 2007 - 07:18:45 CDT

Hi Jeffrey,
that figure was made by using the volmap plugin to generate a volumetric
map of the complete simulated system (including solvent); the map was
then loaded and made transparent (I believe we used one of the glass
materials, slightly modified) and given a fairly high isovalue.
Best,
Peter

Jeffry D Madura wrote:
>
> Can some one provide details on how to render the solvent similar to
> that shown in the satellite tobacco mosaic virus image on the VMD website?
>
>
>
> Jeffry D. Madura
>
> Professor & Chair
>
> Department of Chemistry & Biochemistry
>
> Duquesne University
>
> 600 Forbes Avenue
>
> Pittsburgh, PA 15282
>
>
>
> voice 412-396-6341
>
> voice 412-396-4129
>
> FAX 412-396-5683
>
>
>
> e-mail: madura_at_duq.edu
>
>
>