From: Cesar Luis Avila (cavila_at_fbqf.unt.edu.ar)
Date: Mon Apr 16 2007 - 18:32:28 CDT

Dear all,
I am using vmd 1.8.5 for linux (debian 32 bits). I loaded a NAD molecule
from pdb file and then I tried to save it as mol2 using
$sel writemol2 nad.mol2
The problem I am facing is that some strange characters appear on the
file, preventing it to get read from other programs. VMD apparently has
no problem opening it.
Regards
Cesar Avila

@<TRIPOS>MOLECULE
generated by VMD
44 48 1 0 0
SMALL
NO_CHARGES
****
Energy = 0

@<TRIPOS>ATOM
1 AP -8.2880 -20.3740 8.8430 X. âð¸Rœ¿r×· 2336 NAD 0.000000
2 AO1 -9.3500 -20.0920 7.8510 X. âð¸Rœ¿r×· 2336 NAD 0.000000
3 AO2 -7.9350 -19.7360 10.1450 X. âð¸Rœ¿r×· 2336 NAD 0.000000
4 AO5* -7.8290 -21.9190 8.7230 X. âð¸Rœ¿r×· 2336 NAD 0.000000
5 AC5* -8.1520 -22.7850 7.5740 X. âð¸Rœ¿r×· 2336 NAD 0.000000
6 AC4* -6.8530 -23.1850 6.8800 X. âð¸Rœ¿r×· 2336 NAD 0.000000
7 AO4* -7.2570 -24.0680 5.7590 X. âð¸Rœ¿r×· 2336 NAD 0.000000
8 AC3* -6.0380 -22.0320 6.1740 X. âð¸Rœ¿r×· 2336 NAD 0.000000
9 AO3* -4.6970 -21.9380 6.7400 X. âð¸Rœ¿r×· 2336 NAD 0.000000
10 AC2* -6.0400 -22.3590 4.6830 X. âð¸Rœ¿r×· 2336 NAD 0.000000
11 AO2* -4.9400 -21.9710 3.9220 X. âð¸Rœ¿r×· 2336 NAD 0.000000
12 AC1* -6.3260 -23.8770 4.7130 X. âð¸Rœ¿r×· 2336 NAD 0.000000
13 AN9 -6.9850 -24.3510 3.4920 X. âð¸Rœ¿r×· 2336 NAD 0.000000
14 AC8 -7.9130 -23.7720 2.6210 X. âð¸Rœ¿r×· 2336 NAD 0.000000
15 AN7 -8.2650 -24.5570 1.6140 X. âð¸Rœ¿r×· 2336 NAD 0.000000
16 AC5 -7.5920 -25.7140 1.7520 X. âð¸Rœ¿r×· 2336 NAD 0.000000
17 AC6 -7.5580 -26.9670 0.9630 X. âð¸Rœ¿r×· 2336 NAD 0.000000
18 AN6 -8.2790 -27.1420 -0.1320 X. âð¸Rœ¿r×· 2336 NAD 0.000000
19 AN1 -6.7050 -27.9480 1.4650 X. âð¸Rœ¿r×· 2336 NAD 0.000000
20 AC2 -5.9430 -27.8340 2.5740 X. âð¸Rœ¿r×· 2336 NAD 0.000000
21 AN3 -5.9380 -26.6680 3.3600 X. âð¸Rœ¿r×· 2336 NAD 0.000000
22 AC4 -6.7780 -25.6270 2.9160 X. âð¸Rœ¿r×· 2336 NAD 0.000000
23 O3 -9.5240 -20.9530 9.7290 O.2 âð¸Rœ¿r×· 2336 NAD 0.000000
24 NP -9.7760 -21.4120 11.3090 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
25 NO1 -10.1510 -20.2200 12.0970 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
26 NO2 -8.5710 -22.2120 11.7100 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
27 NO5* -11.1120 -22.3300 11.1420 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
28 NC5* -11.0620 -23.6020 10.4070 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
29 NC4* -12.1620 -24.5040 10.8530 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
30 NO4* -12.2250 -24.5220 12.3470 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
31 NC3* -13.6110 -24.0670 10.3990 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
32 NO3* -14.3580 -25.2030 9.9090 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
33 NC2* -14.2560 -23.4960 11.6770 N.am âð¸Rœ¿r×· 2336 NAD 0.000000
34 NO2* -15.6630 -23.5280 11.6530 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
35 NC1* -13.5960 -24.3910 12.7910 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
36 NN1 -13.6060 -23.8090 14.1870 N.am âð¸Rœ¿r×· 2336 NAD 0.000000
37 NC2 -13.1200 -22.4490 14.3950 N.am âð¸Rœ¿r×· 2336 NAD 0.000000
38 NC3 -12.8430 -21.9970 15.6290 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
39 NC7 -12.3390 -20.5870 15.8630 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
40 NO7 -13.1040 -19.7730 16.4340 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
41 NN7 -11.1020 -20.2540 15.4620 N.am âð¸Rœ¿r×· 2336 NAD 0.000000
42 NC4 -13.0210 -22.8940 16.8600 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
43 NC5 -14.0440 -23.9900 16.5980 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
44 NC6 -14.0690 -24.5720 15.2980 N.3 âð¸Rœ¿r×· 2336 NAD 0.000000
@<TRIPOS>BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 1 23 1
5 4 5 1
6 5 6 1
7 6 7 1
8 6 8 1
9 7 12 1
10 8 9 1
11 8 10 1
12 10 11 1
13 10 12 1
14 12 13 1
15 13 14 1
16 13 22 1
17 14 15 1
18 15 16 1
19 16 17 1
20 16 22 1
21 17 18 1
22 17 19 1
23 19 20 1
24 20 21 1
25 21 22 1
26 23 24 1
27 24 25 1
28 24 26 1
29 24 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 29 31 1
34 30 35 1
35 31 32 1
36 31 33 1
37 33 34 1
38 33 35 1
39 35 36 1
40 36 37 1
41 36 44 1
42 37 38 1
43 38 39 1
44 38 42 1
45 39 40 1
46 39 41 1
47 42 43 1
48 43 44 1

@<TRIPOS>SUBSTRUCTURE
1 **** 1 TEMP 0 **** **** 0 ROOT