VMD-L Mailing List

From: hirdesh kumar (hirdeshs8_at_gmail.com)
Date: Tue Aug 24 2010 - 23:38:00 CDT

I did the same mistake in my starting

On Tue, Aug 24, 2010 at 10:38 AM, NG HUI WEN <HuiWen.Ng_at_nottingham.edu.my>wrote:

> Thanks a lot for the suggestion guys, much appreciated! Indeed I loaded
> the structure and trajectory files separately. Got it to work now. Cheers!!
>
>
>
> HW
>
>
>
> *From:* Tim Travers [mailto:tstravers_at_gmail.com]
> *Sent:* Tuesday, August 24, 2010 12:26 PM
> *To:* NG HUI WEN
> *Cc:* vmd-l_at_ks.uiuc.edu
> *Subject:* Re: vmd-l: Structure won't move after loading trajectory
>
>
>
> > I have a structure NVT.gro and a trajectory NVT.trr (500 frames). After
> loading
>
> > the structure through file > new molecule > “browse” in molecule file
> browser,
>
> > I did the same thing to load the trajectory.
>
> Hi there,
>
>
>
> Based on the above statement, it seems that you loaded the structure and
>
> trajectory files as two separate molecules. What you want to do is load the
>
> trajectory such that its frames are "added" to the structure file. The
> following
>
> section of the VMD user's guide:
>
>
>
> http://www.ks.uiuc.edu/Research/vmd/current/ug/node41.html
>
>
>
> should indicate how to do this; the key here is setting the "Load files
> for:"
>
> field. The result should be that both files will be loaded into VMD as one
>
> molecule, and not as two separate molecules.
>
>
>
> Hope this helps,
>
> Tim
>
>
>
>
>
> <<
>
> Email has been scanned for viruses by UNMC email management service<http://www.nottingham.edu.my>
>
> >>
> <<
>
> Email has been scanned for viruses by UNMC email management service<http://www.nottingham.edu.my>
> >>
> 

-- 
Thanks and Regards,
Hirdesh,
******************************************
Hirdesh Kumar
PhD Scholar
School of Biological Sciences
Indian Institute of Technology, Delhi
Hauz Khaas, New Delhi-16
http://www.iitd.ac.in/bioschool.html
******************************************