VMD-L Mailing List

From: Jervis Chu (nxchu_at_foxmail.com)
Date: Tue Jan 04 2011 - 01:58:39 CST

Hi,

 I generated an XYZ file, like
 
3
atoms
1 0.0 0.0 0.0
1 1.6 0.0 0.0
1 2.9 0.0 0.0
3
atoms
1 0.0 0.0 0.0
1 1.7 0.0 0.0
1 3.0 0.0 0.0
...
...

All atoms are carbon.

I want to show dynamic bonds in VMD with cutoff distance 1.6. Can anyone tell me how to do this on XYZ files.

Thanks in advance.

Regards,

Jervis Chu