VMD-L Mailing List

From: Salvador H-V (chava09hv_at_gmail.com)
Date: Sun Dec 06 2009 - 20:00:39 CST

Dear All,

I am doing a coarse grained simulation with at least 5 different kinds of
molecules.
I began my simulation with a random configuration of the molecules.
I am interested in the formation of clusters during the simulation.
It is expected that they will aggregate in just one big complex like a
vesicle.
I need to count how many small aggregates are in every time step.
Of course, I can do it by visualizing the snapshot in VMD but I was
wondering if there is some script to do that?

Thanks a lot for your help,

SHV