VMD-L Mailing List
From: Josh Vermaas (vermaas2_at_illinois.edu)
Date: Tue Nov 12 2013 - 08:42:11 CST
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Hi Bharat,
For the hydrogen bonds representation to work, all the potential atoms
for hydrogen bonding need to be in the same representation. So the logic
would be "(not water and resid 115 to 118) or (water within 3 of resid
115 to 118)"
-Josh
On 11/11/2013 08:24 PM, bharat gupta wrote:
> Hi,
>
> I want to show the hydrogen bond (as lines) between some selected
> residues and water. I used the following representation mode :
>
> resid 115 to 118 as CPK and then hydrogen bonds (as separate
> representation)
> water within 3 of resid 115 to 118 as lines, then hydrogen bonds (as
> separate representation)
>
> After that I chose update selection in every frame in the Trajectory
> tab. But still I am not able to get the hydrogen representation
> between residues and water molecules. But by doing this I am getting
> h-bonds between water molecules. How can I show th h-bonds between
> residues and water molecules ??
>
> Thanks
> --
> Bharat
>
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