VMD-L Mailing List

From: li (zlee_at_ustc.edu)
Date: Mon Nov 15 2004 - 00:42:15 CST

Replyed From: li <zlee_at_ustc.edu>

Maybe this is helpful:
http://www.ks.uiuc.edu/Research/namd/tutorial/NCSA2002/hands-on/
Anyway,with VMD,you can cut a hole,then put the protein in.

> Hi,
> I want to surround my protein with a lipid bilayer completely (in case
> of trans-membrane protein) or partially (in case of membrane-binding
> ones).
> I can generate a lipid bilayer in VMD using the package and command
> 'membrane' but I do not know how to put this lipid layer at a particular
> orientation to the protein.
> I would appreciate any help.
> thanks,
> Nitin
> 

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