From: shiziyuan (
Date: Tue Jun 15 2010 - 15:44:58 CDT

Dear All,

I want to visualize my lammps trajectories results in VMD. But because of my
results are from parallel computing, the number of atom is not arranged in
an ordered way. So when I visualized my results by writing the script on

vmd mywater.psf -lammpstrj dump.mywater

I was able to visualize but the visualization is mixed up together.

If I visualized results from running on just single processor which the
atoms were listed in an ordered way, It's OK. But from parallel results,
it's messed up.

Can anybody give me some suggestion?