VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Apr 12 2004 - 21:59:15 CDT

Hi,
  You should be able to load the "DCD" format trajectory files in VMD
without any trouble. I know that Charmm will also generate some
DCD variants that VMD cannot read (from what one individual told me
previously, though I don't have any details).
We have a plugin that reads charmm binary coordinate files as well,
but I don't believe those contain trajectories.

  John Stone
  vmd_at_ks.uiuc.edu

On Sun, Apr 11, 2004 at 11:36:05PM -0500, Ajith Gunaratne wrote:
>
> Hi
>
> I am a graduate student of Iowa state university and my research area is MDS. I am
> really happy to use VMD. But I have question for you. I do appreciate if you can help me.
> I
> have run CHARM and got a binary format trajectory file from it. But I do know how to
> visualize the trajectory. The extension I got it .cor . I am wondering I can use VMD to
> see
> the atom moment.
>
> thank
>
> ajith
>
>
>
> "Truly great friends are hard to find, difficult to leave, and impossible
> to forget."
>
>
>
>
>
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078