VMD-L Mailing List

From: Richard Wood (Richard.Wood_at_purduecal.edu)
Date: Wed Oct 01 2014 - 05:54:59 CDT

Couldn't one do this easier in another program?

Richard

________________________________
From: owner-vmd-l_at_ks.uiuc.edu [owner-vmd-l_at_ks.uiuc.edu] on behalf of Ajasja Ljubeti [ajasja.ljubetic_at_gmail.com]
Sent: Wednesday, October 01, 2014 4:45 AM
To: Amit Jaiswal
Cc: vmd-l_at_ks.uiuc.edu
Subject: Re: vmd-l: Reg: Peptide dimer

I'm sure it's possible. What have you tried so far?
If I would have to do it, I would load the peptide twice (into two molecules), orient the second molecule, merge them using topotools<https://sites.google.com/site/akohlmey/software/topotools/topotools---documentation#TOC-mergemols-list-of-molecule-ids-> and save them to a pdb.

Good luck,
Ajasja

On 1 October 2014 10:42, Amit Jaiswal <amitjai20_at_gmail.com<mailto:amitjai20_at_gmail.com>> wrote:
Hi Everyone,

I would like to know if is it possible to prepare peptide dimer in VMD. If yes, how and if no what are the possible ways to prepare it? Please let me know and thanks in advance.

With kind regards,
Amit Jaiswal 

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Amit Jaiswal,
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Centre for Bioinformatics,
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