VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Wed Oct 01 2014 - 04:45:43 CDT

I'm sure it's possible. What have you tried so far?
If I would have to do it, I would load the peptide twice (into two
molecules), orient the second molecule, merge them using topotools
<https://sites.google.com/site/akohlmey/software/topotools/topotools---documentation#TOC-mergemols-list-of-molecule-ids->
and
save them to a pdb.

Good luck,
Ajasja

On 1 October 2014 10:42, Amit Jaiswal <amitjai20_at_gmail.com> wrote:

> Hi Everyone,
>
> I would like to know if is it possible to prepare peptide dimer in VMD. If
> yes, how and if no what are the possible ways to prepare it? Please let me
> know and thanks in advance.
>
>
> With kind regards,
> Amit Jaiswal
>
> --
>
> *Yours Sincerely,*
>
> *~~~~~~~~~~~~~~~~~~~~~~~~**~~~*
>
> *Amit Jaiswal,*
>
> *A.T. Road, Tarajan,*
>
> *Jorhat - 785001,*
>
>
> *Assam.-------------------------------------------*
>
> *Centre for Bioinformatics,Pondicherry Central University,*
>
> *Pondicherry - 605014,*
>
> *Pondicherry. *
> *~~~~~~~~~~~~~~~~~~~~~~~~**~~~**~*
>