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From: Anirban Ghosh (anirbanz83_at_yahoo.co.in)
Date: Tue Nov 11 2008 - 22:27:15 CST

I am using the following script to use psfgen: ------------------------------------------------------------ package require psfgen resetpsf topology top_cg_prot_watr.inp segment A { pdb CG_RES_TNF.pdb } coordpdb CG_RES_TNF.pdb A segment B { pdb cg_solvate.pdb } coordpdb cg_solvate.pdb B guesscoord writepdb CG_FINAL_TNF.pdb writepsf CG_FINAL_TNF.psf ---------------------------------------------------------------------- Anirban Ghosh M.Tech Bioinformatics University of Hyderabad ________________________________ From: Peter Freddolino <petefred_at_ks.uiuc.edu> To: Anirban Ghosh <anirbanz83_at_yahoo.co.in> Cc: VMD List <vmd-l_at_ks.uiuc.edu> Sent: Wednesday, 12 November, 2008 9:52:28 AM Subject: Re: vmd-l: Re: Are you using readpsf/coordpdb or segment to load the build molecules in psfgen? Best, Peter Anirban Ghosh wrote: Add more friends to your messenger and enjoy! Go to http://messenger.yahoo.com/invite/